PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G289800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 296aa    MW: 30473.1 Da    PI: 4.9994
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G289800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-07446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        +C+ ++ +++   C  ++  lC  C  + H+       H+++p
  Sevir.4G289800.1.p  4 RCDVCGAEPAAVLCCADEAALCSACDRSVHRAnklahkHRRIP 46
                        8*****************************7799996666665 PP

2zf-B_box24.36.2e-0861101337
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                         ++ C+ ++e +   fC +++  lC+dC + +H+       H
  Sevir.4G289800.1.p  61 APLCDVCKERRGLVFCVEDRAILCADCDDPIHSAndltakH 101
                         579*****************************655555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.808147IPR000315B-box-type zinc finger
SMARTSM003361.3E-9147IPR000315B-box-type zinc finger
CDDcd000211.18E-7347No hitNo description
PfamPF006437.3E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.34359106IPR000315B-box-type zinc finger
SMARTSM003362.8E-1559106IPR000315B-box-type zinc finger
PfamPF006431.3E-562102IPR000315B-box-type zinc finger
CDDcd000214.34E-763106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLVRCDVCGA EPAAVLCCAD EAALCSACDR SVHRANKLAH KHRRIPLLQP SGDSSPAAAA  60
APLCDVCKER RGLVFCVEDR AILCADCDDP IHSANDLTAK HSRFLLVGAK LSAALVDQSL  120
PSPDDCGRGN GTGEPDGVAA AICAQDSCTA KSSALDCSNS YGAGAGGGSS SSSISDYLTN  180
ICPGWRVDDL LFDDAAFSAA SNAGCDEHEQ VPSLDADLFD VVAGRPGKRG AWYGGGALGL  240
EKVSAASIAV PTAAKQQGRV RERHWSCDSD SDVFAVPEIS PQPLAKKARP PATSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384501e-117BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680731e-117EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587761e-117HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701127.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLK3XYI50.0K3XYI5_SETIT; Uncharacterized protein
STRINGSi006993m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.14e-39salt tolerance homolog2